Okay, if you just straight uploaded the unzipped version of the 1.4.1 BETA installation and you have to manually CHMOD your folders via the instructions on the install page, you will need to include the following permissions or the statistics module will not work:
666-/modules/cache/templates/fisubice/content_values.tpl.php
666-/modules/cache/templates/fisubice/content_statistical.tpl.php
666-/modules/cache/templates/fisubice/content_bars.tpl.php
666-/modules/cache/templates/fisubice/decompiled.php.html
666-/modules/cache/explain/e2.html
That is all the permissions differences I can see. I posted this on the other topic but figured we could get better exposure if I posted here so people could see it.